Coarse-Grained Molecular Dynamics Simulation
CURP (CURrent calculation for Proteins)
CURP tutorial
Visualize 3D Potential of Mean Force (PMF) Map of Placing CO Molecule in Myoglobin (Tsuduki et al. J. Chem. Phys. (2012) 136, 165101)
Force-field parameters for the non-standard groups of cryptochrome/photolyase family proteins (Sato et al. Chem. Phys. Lett. 633: 247–251, (2015))
Force-field parameters for the deoxy-, oxy-, and carbon monoxy heme groups of FixLH (Ota et al. “Energy Exchange Network Model Demonstrates Protein Allosteric Transition: An Application to an Oxygen Sensor Protein” J. Phys. Chem. B 123: 768-775, 2019)
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